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Table 3 M. jannaschii genes located in the region with 11 bp periodicity.

From: PerPlot & PerScan: tools for analysis of DNA curvature-related periodicity in genomic nucleotide sequences

Locus tag Start End Strand Product Species with top three
BLAST hitsa
MJ0782 703765 705786 - transcription initiation factor IIB Methanobacterium sp.
Methanobrevibacter ruminantium
Methanothermobacter thermoautotrophicus
MJ0782.1 705793 706038 - H/ACA RNA-protein complex component Gar1 Methanopyrus kandleri
Halorubrum lacusprofundi
Methanothermobacter thermoautotrophicus
MJ0783 706179 706739 + hypothetical protein Acidianus hospitalis
Thermococcus sibiricus
*Clostridium stricklandii
MJ0784 707015 708091 + H(2)-dependent methylenetetrahydro-methanopterin dehydrogenase Methanothermus fervidus
Methanoplanus petrolearius
Methanothermobacter thermoautotrophicus
MJ0785 708313 709440 + biotin synthase Methanothermus fervidus
Methanothermobacter thermoautotrophicus
Methanothermobacter marburgensis
MJ0785.1 709430 709999 + hypothetical protein +Karlodinium micrum chloroplast
*Saccharophagus degradans
MJ0786 710062 710622 + hypothetical protein Methanohalobium evestigatum
Methanohalophilus mahii
Methanococcoides burtonii
MJ0787 710772 712286 + hypothetical protein Methanothermus fervidus
Methanobrevibacter smithii
Methanothermobacter marburgensis
MJ0788 712302 712541 + hypothetical protein Methanosarcina mazei
Methanoplanus petrolearius
+ Neosartorya fischeri
MJ0789 712624 712974 + hypothetical protein Methanohalophilus mahii
Methanosarcina mazei
Methanosarcina barkeri
MJ0790 713009 713698 + NADH dehydrogenase subunit 1 Methanothermus fervidus
Methanothermobacter thermoautotrophicus
Methanothermobacter marburgensis
MJ0791 713720 715174 - argininosuccinate lyase Methanothermus fervidus
Methanothermobacter marburgensis
Methanothermobacter thermoautotrophicus
  1. a Excluding the order Methanococcales. Only one hit per species is reported (excluding hits to multiple strains). Hits to eubacterial proteins are labeled by an asterisk and hits to eukaryotes or organelles by a "+". The blastp program implementation at the NCBI web site http://blast.ncbi.nlm.nih.gov with default parameters was used to find the top hits. Fewer than three hits are shown when less than three significant hits were detected.
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Microbial Informatics and Experimentation

ISSN: 2042-5783

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